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    /**
     * Interrupts this thread.
     *
     * <p> Unless the current thread is interrupting itself, which is
     * always permitted, the {@link #checkAccess() checkAccess} method
     * of this thread is invoked, which may cause a {@link
     * SecurityException} to be thrown.
     *
     * <p> If this thread is blocked in an invocation of the {@link
     * Object#wait() wait()}, {@link Object#wait(long) wait(long)}, or {@link
     * Object#wait(long, int) wait(long, int)} methods of the {@link Object}
     * class, or of the {@link #join()}, {@link #join(long)}, {@link
     * #join(long, int)}, {@link #sleep(long)}, or {@link #sleep(long, int)},
     * methods of this class, then its interrupt status will be cleared and it
     * will receive an {@link InterruptedException}.
     *
     * <p> If this thread is blocked in an I/O operation upon an {@link
     * java.nio.channels.InterruptibleChannel InterruptibleChannel}
     * then the channel will be closed, the thread's interrupt
     * status will be set, and the thread will receive a {@link
     * java.nio.channels.ClosedByInterruptException}.
     *
     * <p> If this thread is blocked in a {@link java.nio.channels.Selector}
     * then the thread's interrupt status will be set and it will return
     * immediately from the selection operation, possibly with a non-zero
     * value, just as if the selector's {@link
     * java.nio.channels.Selector#wakeup wakeup} method were invoked.
     *
     * <p> If none of the previous conditions hold then this thread's interrupt
     * status will be set. </p>
     *
     * <p> Interrupting a thread that is not alive need not have any effect.
     *
     * @throws  SecurityException
     *          if the current thread cannot modify this thread
     *
     * @revised 6.0
     * @spec JSR-51
     */
    public void interrupt() {
        if (this != Thread.currentThread())
            checkAccess();

        synchronized (blockerLock) {
            Interruptible b = blocker;
            if (b != null) {
                interrupt0();           // Just to set the interrupt flag
                b.interrupt(this);
                return;
            }
        }
        interrupt0();
    }

Native

thread.cpp

void Thread::interrupt(Thread* thread) {
  trace("interrupt", thread);
  debug_only(check_for_dangling_thread_pointer(thread);)
  os::interrupt(thread);
}

os_windows.cpp

void os::interrupt(Thread* thread) {
  assert(!thread->is_Java_thread() || Thread::current() == thread || Threads_lock->owned_by_self(),
         "possibility of dangling Thread pointer");

  OSThread* osthread = thread->osthread();
  osthread->set_interrupted(true);
  // More than one thread can get here with the same value of osthread,
  // resulting in multiple notifications.  We do, however, want the store
  // to interrupted() to be visible to other threads before we post
  // the interrupt event.
  OrderAccess::release();
  SetEvent(osthread->interrupt_event());
  // For JSR166:  unpark after setting status
  if (thread->is_Java_thread())
    ((JavaThread*)thread)->parker()->unpark();

  ParkEvent * ev = thread->_ParkEvent ;
  if (ev != NULL) ev->unpark() ;

}

osthread->set_interrupted(true);
((JavaThread*)thread)->parker()->unpark();